![]() Imeji is a scientific multimedia data repository with dedicated metadata management. My hope in creating this program is to generate as realistic data as possible to assist in assessing the accuracy of genome assembly tools.Ĭlinical DNA Sequencing Analysis and Data Warehouse Additionally the program provides the ability to model both site and base specific error, and scripts are provided to train this error model on real datasets. ![]() Some of these quirks include the potential for chimeric reads, and non-biotinylated fragment pull down in mate-pair libraries. This project attempts to model as many of the quirks that exist in Illumina data as possible. It provides a formal language to write mathematical definitions, executable algorithms and theorems together with an environment for semi-interactive development of machine-checked proofs.Īn illumina paired-end and mate-pair short read simulator. ![]() Mirror of official ROOT git repository located atĬoq is a formal proof management system. Software for calculating epitaxial lattice matches considering symmetries of different crystal systems Streaming fragment assignment and quantification for high-throughput sequencing. Machine learning and data mining algorithms for JRubyĪ framework for a rapid reproducible design, analysis and plotting of experiments in behavioral neuroscience and psychology. Tools for dealing with amplicon experiments The R programmatic interface to Synapse servicesĪnalyze Survey Data for Free with the R Languageįor running psychology and neuroscience experiments Bio-Formats is released under the GNU General Public License (GPL) commercial licenses are available from Glencoe Software. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Status: Usable (Latest stable version 0.9.2)īio-Formats is a Java library for reading and writing data in life sciences image file formats. docx format to NLM/JATS-XML for scholarly/scientific article typesetting. MeTypeset is a tool to covert from Microsoft Word. Tools for scientific computation in Ruby/Rails It is currently the core analysis code powering the Materials Project. Python Materials Genomics (pymatgen) is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes. Quickly download, clean up, and install ecological datasets into a database management systemĬollection of classic computer science paradigms, algorithms, and approaches written in JavaScript. The Python ensemble sampling toolkit for affine-invariant MCMC Scientific-grade astronomy routines for Python Nimbus is a Ruby gem to implement Random Forest algorithms in a genomic selection contextĪuxiliary documentation for the realXtend architecture Ruby bindings to the Stanford Core NLP tools (English, French, German).Ĭontent Analysis System is a framework for mining scientific publications using Apache Hadoop.
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